My new paper, which I believe is the first published application of DisMod-PDE: Projected growth of the adult congenital heart disease population in the United States to 2050: an integrative systems modeling approach
http://www.pophealthmetrics.com/content/13/1/29
Monthly Archives: October 2015
Projecting ACHD Cases
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Filed under global health
My top 20 numpy calls
One fun thing about using the IPython Notebook as my lab book for all my research is that I can do “me”-search in my copious spare time, for example to see the top 25 `numpy` calls I’ve used this year:
In [1]:
import glob
In [2]:
lines = ''
for fname in glob.glob('*.py'):
with file(fname) as f:
lines += f.read()
lines += '\n'
In [3]:
import re
# Find top np.* calls
In [9]:
np_calls = re.findall('np\.[\w\.]+', lines)
np_calls[:5]
Out[9]:
['np.linspace',
'np.random.random',
'np.random.normal',
'np.sqrt',
'np.random.normal']
In [10]:
import pandas as pd
In [12]:
pd.Series(np_calls).value_counts().head(20)
Out[12]:
np.array 219
np.random.normal 170
np.mean 130
np.random.seed 126
np.round 124
np.log 119
np.exp 114
np.linspace 96
np.random.choice 84
np.where 84
np.zeros 78
np.ones 65
np.dot 62
np.empty 62
np.sum 52
np.absolute 49
np.nan 47
np.arange 45
np.inf 38
np.sqrt 37
Number one thing: `np.array`! I wonder why I use that.
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Filed under software engineering
CCCSMF Accuracy
I have a new verbal autopsy paper out, which goes deep into the weeds of how to measure the accuracy of a method for identifying the underlying cause of death at the population level from survey data. http://www.pophealthmetrics.com/content/13/1/28
A fun online appendix includes probabilistic combinatorial calculations of the sort that I was actually trained in: http://www.pophealthmetrics.com/content/supplementary/s12963-015-0061-1-s2.zip
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Filed under global health
Deep Dream and Smudge
I would like to combine the Google Deep Dream with Smudge. This is a way to remind me to try sometime.
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Filed under Uncategorized
DisMod Book Available
I have a real printed copy of the DisMod book now, and if I have understood correctly, it is really available for purchase starting today!
I meant to have a picture of it in my hands to go here, but I didn’t get it in time. Here is a multiscale rainbow smudge instead:

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Filed under global health
A tree for a forest
There was a recent CrossValidated question that caught my interest: http://stats.stackexchange.com/questions/172163/making-a-single-decision-tree-from-a-random-forest
Here is my answer: http://stats.stackexchange.com/questions/172163/making-a-single-decision-tree-from-a-random-forest/172811#172811
It made me ask another question: http://stats.stackexchange.com/questions/172810/are-there-any-new-approaches-to-generating-random-examples-in-combined-multiple
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Smudge variant 2
Speaking of smudge variants, here is a multitouch drawing game that reminds me of lightbrite, if you know what I’m talking about. The 3 year old calls it “candy smudge” or “game smudge” depending on mood: http://bl.ocks.org/aflaxman/raw/a18d97fd21ae6a0ac171/
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Filed under software engineering
Smudge variant 1
Do you remember a year ago when I made a multitouch drawing thingie with d3js? https://healthyalgorithms.com/2014/12/12/introducing-smudge/
My 3 year old and I modded it, and may we now share “castle smudge” with you: http://bl.ocks.org/aflaxman/raw/26fc5aa0e14b01754b0f/
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Filed under software engineering
