Category Archives: Uncategorized


My colleagues at IHME have been running a Statistics reading group for a year or more now, and this quarter I have joined them to carefully read Cameron Davidson-Pilon’s book Probabilistic Programming & Bayesian Methods for Hackers. We are now three sessions in, and it is going really well, IMHO. I’ve been doing some good thinking about what it takes to get started in applied statistics and Bayesian methods.

More to come.

Comments Off on #stats_book_club

Filed under Uncategorized

SWC Jokes

More thoughts on my recent 12 hours of Software-Carpentry-inspired teaching: one feedback card that I will keep in my rainy-day folder said the learner liked my jokes.

The jokes came in after the second break on the first day, before I figured out that 15 minutes was the right length for the break.  I was trying to bring the group back together after only 5 minutes off, and having trouble. “Knock knock,” I said, not too loudly.  “Who’s there?” answers some handful of learners who heard me over the racket. Now the room was starting to focus on this. But what did I have to deliver? “Isabel,” I offered, thanks to my 7-year-old neighbor.

Do you know this one? I need to get some Python-relevant material for future courses.  Anyway, more of the class was now working with me on it. “Isabel who?” they politely offered. “Is a bell necessary on a bicycle?” Definitely a winner… you never know what will go over until you try it on stage.

Comments Off on SWC Jokes

Filed under Uncategorized

SWC-inspired 12 hours

I’ve recently completed 12 hours of teaching Introduction to Python and SQL for an audience of new Institute for Health Metrics and Evaluation (IHME) staff and fellows.  SWC is a gem! (I have been thinking this for a while.)

In retrospect, what worked and what might I do differently next time?

Some SWC mechanics that worked well: Live coding, Hands-on exercises, Sticky notes, Jupyter notebooks, and friendly teaching assistants.

Some things to change: Remember to give the big-picture framing for each section, Do more explanation of solutions after hands-on exercises, Share the syllabus ahead of time, and emphasize that this is *introduction* material.

Some changes that I made mid-stream: longer breaks (15 minutes every hour or so), connect the examples to IHME-specific domains.

I also did not use an etherpad until we got through Creating Functions (Section 6 in the Python Inflammation Lession). That might have been too much typing in the first two sessions, and it was definitely appreciated.

Comments Off on SWC-inspired 12 hours

Filed under Uncategorized

Jake’s exposition of Bayesianism

Still a gem:


(A collection of gems?)

And, TIL, (editors note, actually a few months ago…) there there is a paper version of it, too:

Comments Off on Jake’s exposition of Bayesianism

Filed under Uncategorized

Not the numbers

I’m working on conflict epi stuff again, and it is a challenge.  Here is a short film that I ran into which tells some of these stories a different way than our numbers.

Comments Off on Not the numbers

Filed under Uncategorized

Machine learning in population health: Opportunities and threats

My colleague Theo Vos and I have a perspective published recently in PLoS Medicine, Machine learning in population health: Opportunities and threats. It is not long, so you can skim it in seconds, or read it all in just minutes.

It is not directly related to a short film that I enjoyed recently.  Maybe indirectly.

Comments Off on Machine learning in population health: Opportunities and threats

Filed under Uncategorized

Permutation Game

This summer my kids got a gift of a somewhat boring board game, where players were charged with tracing through a jumble of lines to find out what creature got to eat what dessert.  The name escapes me now, and I escaped taking the game home, too.

But it was not all bad—the mechanics of the game made me google “permutation game” which came up with a fun puzzle (and annoying interview question; this phrasing is from a website that helps people cram for job interviews):

Alice and Bob play the following game:

They choose a permutation of the first  numbers to begin with.

They play alternately and Alice plays first.

In a turn, they can remove any one remaining number from the permutation.

The game ends when the remaining numbers form an increasing sequence. The person who played the last turn (after which the sequence becomes increasing) wins the game.

Assuming both play optimally, who wins the game?

This game turns out to be kind of fun, at least if you find this sort of thing fun. I also tried a twist where we started with a string of letters, and crossed them off until they make a word.

Comments Off on Permutation Game

Filed under Uncategorized