IPython Notebook Clipboard Extension

I was so excited when I got the image pasting to work in my IPython Notebook, (although now I can’t find any mention of it on Healthy Algorithms…) but then things changed and I didn’t keep up, and it stopped working for me for a while. But then I _needed_ it, and so I figured out how to make it work again:

* upgrade IPython to the latest development version from github – https://github.com/ipython/ipython
* install the chrome_clipboard ipython notebook extension – https://github.com/ipython-contrib/IPython-notebook-extensions/wiki/chrome_clipboard
* make it work each time, by adding a line to `~/.ipython/profile_[name]/static/custom/custom.js`:

$([IPython.events]).on('app_initialized.NotebookApp', function(){

So nice to have it back.

Leave a comment

Filed under software engineering

World Bank Estimates the Cost of Contact Tracing in Ebola Response

I want to save a bookmark to this little table in a big report on the economic impacts of Ebola in West Africa: World Bank country offices in Nigeria and Senegal produced estimates of the cost of successfully tracing contacts when responding to imported cases. Expensive, but worth it!

contact tracing costs

Leave a comment

Filed under global health

CVRS in 2010 Report

Perhaps more than I ever wanted to know about the state of the birth and death registration system in South Africa circa 2010: http://unstats.un.org/unsd/demographic/CRVS/Technical%20report%20SADC%20final%20v2.pdf


Leave a comment

Filed under global health, Uncategorized

Tools They Use

I’m always on the lookout for new tools that I should be using in my daily work. Here is a short write-up by #hackebola researcher Caitlin Rivers on the subject: http://www.caitlinrivers.com/blog/the-setup-tools-i-use-to-track-emerging-infectious-diseases

Leave a comment

Filed under global health

Python Pandas Intros

I’m going to give a Python Pandas guest lecture in the Python Science class next week, and I thought I’d take a look at the Pandas intros that are out there. There are a lot now! Here are some that I flipped through:










Its fun being a teacher in the age of information.

Leave a comment

Filed under education

Les Roberts blogs from Sierra Leone

A few links to Les Roberts blogging from Sierra Leone:





Leave a comment

Filed under global health

Verbal Autopsy Analysis Slides

I gave a talk on automatic methods to map from verbal autopsy interview results to underlying causes of death last August, and I like the slides so much that I’m going put them online here. Cheers to the new IHME themed templates for Power Point!



Filed under machine learning