IPython Notebook Clipboard Extension

I was so excited when I got the image pasting to work in my IPython Notebook, (although now I can’t find any mention of it on Healthy Algorithms…) but then things changed and I didn’t keep up, and it stopped working for me for a while. But then I _needed_ it, and so I figured out how to make it work again:

* upgrade IPython to the latest development version from github – https://github.com/ipython/ipython
* install the chrome_clipboard ipython notebook extension – https://github.com/ipython-contrib/IPython-notebook-extensions/wiki/chrome_clipboard
* make it work each time, by adding a line to `~/.ipython/profile_[name]/static/custom/custom.js`:

$([IPython.events]).on('app_initialized.NotebookApp', function(){
require(['nbextensions/chrome_clipboard'],function(module){
module.load_ipython_extension();
});
});

So nice to have it back.

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World Bank Estimates the Cost of Contact Tracing in Ebola Response

I want to save a bookmark to this little table in a big report on the economic impacts of Ebola in West Africa: World Bank country offices in Nigeria and Senegal produced estimates of the cost of successfully tracing contacts when responding to imported cases. Expensive, but worth it!

contact tracing costs

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CVRS in 2010 Report

Perhaps more than I ever wanted to know about the state of the birth and death registration system in South Africa circa 2010: http://unstats.un.org/unsd/demographic/CRVS/Technical%20report%20SADC%20final%20v2.pdf

Capture

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Tools They Use

I’m always on the lookout for new tools that I should be using in my daily work. Here is a short write-up by #hackebola researcher Caitlin Rivers on the subject: http://www.caitlinrivers.com/blog/the-setup-tools-i-use-to-track-emerging-infectious-diseases

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Python Pandas Intros

I’m going to give a Python Pandas guest lecture in the Python Science class next week, and I thought I’d take a look at the Pandas intros that are out there. There are a lot now! Here are some that I flipped through:

http://pandas.pydata.org/pandas-docs/stable/10min.html

http://nbviewer.ipython.org/gist/fonnesbeck/5850375

http://www.gregreda.com/2013/10/26/intro-to-pandas-data-structures/

http://www.gregreda.com/2013/10/26/working-with-pandas-dataframes/

http://www.gregreda.com/2013/10/26/using-pandas-on-the-movielens-dataset/

http://synesthesiam.com/posts/an-introduction-to-pandas.html

http://www.datarobot.com/blog/introduction-to-python-for-statistical-learning/

http://www.kevinsheppard.com/images/0/09/Python_introduction.pdf

http://blog.kaggle.com/2013/01/17/getting-started-with-pandas-predicting-sat-scores-for-new-york-city-schools/

Its fun being a teacher in the age of information.

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Les Roberts blogs from Sierra Leone

A few links to Les Roberts blogging from Sierra Leone:

http://pfmhcolumbia.wordpress.com/2014/10/12/les-says-farewell/

http://pfmhcolumbia.wordpress.com/2014/10/12/oneheavygig/

http://pfmhcolumbia.wordpress.com/2014/10/12/les-roberts-the-prediction-landscape-is-looking-bad/

http://pfmhcolumbia.wordpress.com/2014/10/14/les-roberts-day-10-leaving-columbia-to-be-at-peace-with-columbia/

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Verbal Autopsy Analysis Slides

I gave a talk on automatic methods to map from verbal autopsy interview results to underlying causes of death last August, and I like the slides so much that I’m going put them online here. Cheers to the new IHME themed templates for Power Point!

Capture

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